
ImageSURF: An ImageJ Plugin for Batch Pixel-Based Image Segmentation Using Random Forests
References
- Pham, D L, Xu, C and Prince, J L 2000 Current methods in medical image segmentation. Annual review of biomedical engineering, 2: 315–337. DOI: 10.1146/annurev.bioeng.2.1.315
- Roeder, A H K, Cunha, A, Burl, M C and Meyerowitz, E M 2012 A computational image analysis glossary for biologists. Development, 139(17): 3071–3080. DOI: 10.1242/dev.076414
- Sommer, C, Straehle, C, Kothe, U and Hamprecht, F A 2011 Ilastik: Interactive learning and segmentation toolkit. Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on, 230–233. DOI: 10.1109/ISBI.2011.5872394
- Teverovskiy, M, Vengrenyuk, Y, Tabesh, A, Sapir, M, Fogarasi, S, Pang, H-Y, Khan, F M, Hamann, S, Capodieci, P and Clayton, M 2008 Automated localization and quantification of protein multiplexes via multispectral fluorescence imaging. Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on, 300–303. DOI: 10.1109/ISBI.2008.4540992
- Jucker, M 2010 The benefits and limitations of animal models for translational research in neurodegenerative diseases. Nature medicine, 16(11): 1210–1214. DOI: 10.1038/nm.2224
- Arganda-Carreras, I, Kaynig, V, Rueden, C T, Schindelin, J, Cardona, A and Seung, H S 2016 Trainable_Segmentation: Release v3.1.2. DOI: 10.5281/ZENODO.59290
- Schindelin, J, Rueden, C T, Hiner, M C and Eliceiri, K W 2015 The ImageJ Ecosystem: An Open Platform for Biomedical Image Analysis. Molecular Reproduction and Development, 82: 518–529. DOI: 10.1002/mrd.22489
- Breiman, L 2001 Random forests. Machine learning, 45(1): 5–32. DOI: 10.1023/A:1010933404324
- Frank, E, Hall, M A and Witten, I H 2016 The WEKA Workbench. Morgan Kaufmann, Fourth Edition.
- Supek, F 2015 FastRandomForest. Google Code. Available at:
https://code.google.com/archive/p/fast-random-forest /. - O’Mara, A R, Collins, J M, King, A E, Vickers, J C and Kirkcaldie, M T K 2017 ImageSURF MOAB2 Image Examples. DOI: 10.5281/zenodo.819511
- Rose, J and Goetz, B 2017 Minimal Value Types. Retrieved from:
http://cr.openjdk.java.net/~jrose/values/shady-values.html May 2017.
DOI: https://doi.org/10.5334/jors.172 | Journal eISSN: 2049-9647
Language: English
Submitted on: Mar 28, 2017
Accepted on: Sep 29, 2017
Published on: Nov 6, 2017
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
© 2017 Aidan O'Mara, Anna E. King, James C. Vickers, Matthew T. K. Kirkcaldie, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.