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ConfBuster: Open-Source Tools for Macrocycle Conformational Search and Analysis Cover

ConfBuster: Open-Source Tools for Macrocycle Conformational Search and Analysis

Open Access
|Jan 2018

Figures & Tables

Figure 1

Hierarcherical relation between the ConfBuster scripts. The third-party program and package dependencies of each script are indicated between parenthesis.

Figure 2

Overview of the ConfBuster conformational search process, illustrated for the macrocycle sopharen A (PDB 1W96). A) The macrocycle is cleaved for the conformational search (only one cleavage is presented for the sake of simplicity, in practice all the single bonds between two atoms that are not chiral centers are cleaved during the search), B) The results include several different conformations, which allows to evaluate the conformational space of the macrocycle, C) The lowest energy conformation identified from the search superposed to the experimental structure, and D) Classification of the conformations identified from the search based on the RMSD clustering and using an energy color scale.

DOI: https://doi.org/10.5334/jors.189 | Journal eISSN: 2049-9647
Language: English
Submitted on: Aug 22, 2017
Accepted on: Oct 20, 2017
Published on: Jan 8, 2018
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2018 Xavier Barbeau, Antony T. Vincent, Patrick Lagüe, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.