
ugtm: A Python Package for Data Modeling and Visualization Using Generative Topographic Mapping
References
- Bishop, C M, Svensén, M and Williams, C K I 1998 GTM: The Generative Topographic Mapping. Neural Computation, 10(1): 215–34. DOI: 10.1162/089976698300017953
- Olier, I, Vellido, A and Giraldo, J 2010 Kernel generative topographic mapping. ESANN 2010, 18th European Symposium on Artificial Neural Networks, Bruges, Belgium, April 28–30, 2010, Proceedings.
- Kohonen, T 2001
Self-Organizing Maps . Springer Science & Business Media. DOI: 10.1007/978-3-642-56927-2 - Gaspar, H A, Marcou, G, Horvath, D, Arault, A, Lozano, S, Vayer, P, et al. 2013 Generative topographic mapping-based classification models and their applicability domain: Application to the biopharmaceutics Drug Disposition Classification System (BDDCS). Journal of Chemical Information and Modeling, 53(12): 3318–25. DOI: 10.1021/ci400423c
- Gaspar, H A, Baskin, I I, Marcou, G, Horvath, D and Varnek, A 2015 GTM-Based QSAR Models and Their Applicability Domains. Molecular Informatics, 34(6–7): 348–56. DOI: 10.1002/minf.201400153
- Buitinck, L, Louppe, G, Blondel, M, Pedregosa, F, Mueller, A, Grisel, O, et al. 2013. API design for machine learning software: Experiences from the scikit-learn project. arXiv [cs.LG].
- Nabney, I 2002
NETLAB: Algorithms for Pattern Recognition . Springer Science & Business Media. - Dheeru, D and Taniskidou, E K 2017 UCI machine learning repository (2017). URL:
https://archive.ics.uci.edu/ml . - van der Maaten, L and Hinton, G 2008 Visualizing Data using t-SNE. Journal of Machine Learning Research: JMLR, 9: 2579–605. Nov.
- Cox, T F and Cox, M A A 2000
Multidimensional scaling . Chapman and hall/CRC. - Roweis, S T and Saul, L K 2000 Nonlinear dimensionality reduction by locally linear embedding. Science, 290(5500): 2323–6. DOI: 10.1126/science.290.5500.2323
- n.d. altair. Github.
- Oliphant, T E 2015
Guide to NumPy: 2nd Edition . 2 edition, CreateSpace Independent Publishing Platform. - Jones, E, Oliphant, T and Peterson, P 2001 SciPy: Open Source Scientific Tools for Python.
- Oliphant, T E 2007 Python for Scientific Computing. Computing in Science Engineering, 9(3): 10–20. DOI: 10.1109/MCSE.2007.58
- Hunter, J D 2007 Matplotlib: A 2D Graphics Environment. Computing in Science & Engineering, 9(3): 90–5. DOI: 10.1109/MCSE.2007.55
- Bostock, M n.d. D3.js – Data-Driven Documents.
https://d3js.org/ [accessed May 31, 2018]. - Gaspar, H A, Baskin, I I, Marcou, G, Horvath, D and Varnek, A 2015 Stargate GTM: Bridging Descriptor and Activity Spaces. Journal of Chemical Information and Modeling, 55(11): 2403–10. DOI: 10.1021/acs.jcim.5b00398
DOI: https://doi.org/10.5334/jors.235 | Journal eISSN: 2049-9647
Language: English
Submitted on: Jun 6, 2018
Accepted on: Nov 27, 2018
Published on: Dec 19, 2018
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
Keywords:
© 2018 Héléna Alexandra Gaspar, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.