
pyfMRIqc: A Software Package for Raw fMRI Data Quality Assurance
By: Brendan Williams and Michael Lindner
References
- Erasmus, L, Hurter, D, Naude, M, Kritzinger, H and Acho, S 2004 A short overview of MRI artefacts. South African Journal of Radiology, 8(2): 13. DOI: 10.4102/sajr.v8i2.127
- Friston, K, Williams, S, Howard, R, Frackowiak, R and Turner, R 1996 Movement-Related effects in fMRI time-series. Magnetic Resonance in Medicine, 35(3): 346–355. DOI: 10.1002/mrm.1910350312
- Wu, D, Lewin, J and Duerk, J 1997 Inadequacy of motion correction algorithms in functional MRI: Role of susceptibility-induced artifacts. Journal of Magnetic Resonance Imaging, 7(2): 365–370. DOI: 10.1002/jmri.1880070219
- Birn, R, Bandettini, P, Cox, R, Jesmanowicz, A and Shaker, R 1998 Magnetic field changes in the human brain due to swallowing or speaking. Magnetic Resonance in Medicine, 40(1): 55–60. DOI: 10.1002/mrm.1910400108
- Krüger, G and Glover, G 2001 Physiological noise in oxygenation-sensitive magnetic resonance imaging. Magnetic Resonance in Medicine, 46(4): 631–637. DOI: 10.1002/mrm.1240
- Hood, M, Ho, V, Smirniotopoulos, J and Szumowski, J 1999 Chemical Shift: The Artifact and Clinical Tool Revisited. RadioGraphics, 19(2): 357–371. DOI: 10.1148/radiographics.19.2.g99mr07357
- Todd, N, Moeller, S, Auerbach, E, Yacoub, E, Flandin, G and Weiskopf, N 2016 Evaluation of 2D multiband EPI imaging for high-resolution, whole-brain, task-based fMRI studies at 3T: Sensitivity and slice leakage artifacts. NeuroImage, 124: 32–42. DOI: 10.1016/j.neuroimage.2015.08.056
- McNabb, CB, Lindner, M, Shen, S, Burgess, LG, Murayama, K and Johnstone, T 2020 Inter-slice leakage and intra-slice aliasing in simultaneous multi-slice echo-planar images. Brain Struct Funct. DOI: 10.1007/s00429-020-02053-2
- Raamana, P 2018 VisualQC: Assistive tools for easy and rigorous quality control of neuroimaging data. DOI: 10.5281/zenodo.1211365
- Esteban, O, Birman, D, Schaer, M, Koyejo, O, Poldrack, R and Gorgolewski, K. MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites. PLoS ONE, 12(9):
e0184661 . DOI: 10.1371/journal.pone.0184661 - Power, J 2017 A simple but useful way to assess fMRI scan qualities. NeuroImage, 154: 150–158. DOI: 10.1016/j.neuroimage.2016.08.009
DOI: https://doi.org/10.5334/jors.280 | Journal eISSN: 2049-9647
Language: English
Submitted on: Jun 5, 2019
Accepted on: Sep 16, 2020
Published on: Oct 7, 2020
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
Keywords:
© 2020 Brendan Williams, Michael Lindner, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.