A Grid for Multidimensional and Multivariate Spatial Representation and Data Processing
By: Tobias Stål and Anya M. Reading
References
- An, M, Wiens, D A, Zhao, Y, Feng, M, Nyblade, A A, Kanao, M, Li, Y, Maggi, A and Lévêque, J-J 2015 S-velocity model and inferred Moho topography beneath the Antarctic Plate from Rayleigh waves. Journal of Geophysical Research, Solid Earth, 120: 2007–2010. DOI: 10.1002/2014JB011332
- Bergstra, J, Breuleux, O, Bastien, F, Lamblin, P, Pascanu, R, Desjardins, G, Turian, J, Warde-Farley, D and Bengio, Y 2010 Theano: A cpu and gpu math compiler in python. In Proc. 9th Python in Science Conf, 1.
- Beyreuther, M, Barsch, R, Krischer, L, Megies, T, Behr, Y and Wassermann, J 2010 ObsPy: A Python toolbox for seismology. Seismological Research Letters, 81(3): 530–533. ISSN 0895-0695. DOI: 10.1785/gssrl.81.3.530
- de la Varga, M, Schaaf, A and Wellmann, F 2019 Gempy 1.0: Open-source stochastic geological modeling and inversion. Geoscientific Model Development. DOI: 10.5194/gmd-2018-61
- Fomel, S 2013 Tour with Madagascar, Revisiting s. e. p. and SCons. Journal of Open research software.
- Fomel, S and Hennenfent, G 2007 Computational experiments using SCons, reproducible. ICASSP, 2007, 1257–1260. DOI: 10.1109/ICASSP.2007.367305
- Fretwell, P, Pritchard, H D, Vaughan, D G, Bamber, J L N, Barrand, E, Bell, R, Bianchi, C, Bingham, R G, Blankenship, D D, Casassa, G, Catania, G, Callens, D, Conway, H, Cook, A J, Corr, H F J, Damaske, D, Damm, V, Ferraccioli, F, Forsberg, R, Fujita, S, Gim, Y, Gogineni, P, Griggs, J A, Hindmarsh, R C A, Holmlund, P, Holt, J W, Jacobel, R W, Jenkins, A, Jokat, W, Jordan, T, King, E C, Kohler, J, Krabill, W, Riger-Kusk, M, Langley, K A, Leitchenkov, G, Leuschen, C, Luyendyk, B P, Matsuoka, K, Mouginot, J, Nitsche, F O, Nogi, Y, Nost, O A, Popov, S V, Rignot, E, Rippin, D M, Rivera, A, Roberts, J, Ross, N M, Siegert, J, Smith, A M, Steinhage, D, Studinger, M, Sun, B, Tinto, B K, Welch, B C, Wilson, D, Young, D A, Xiangbin, C and Zirizzotti, A 2013 Bedmap2: Improved ice bed, surface and thickness datasets for Antarctica. The Cryosphere, 7(1): 375–393. DOI: 10.5194/tcd-6-4305-2012
- Gillies, S 2013 The Shapely user manual. URL
https://pypi.org/project/Shapely/ . - Gillies, S 2014 The Fiona user manual. URL
https://fiona.readthedocs.io/en/latest/manual.html . - Gillies, S 2018 Rasterio: Geospatial raster I/O for Python programmers. URL
https://github.com/mapbox/rasterio . - Hinsen, K 2011 A data and code model for reproducible research and executable papers. Procedia Computer Science, 4: 579–588. ISSN 1877-0509. DOI: 10.1016/j.procs.2011.04.061
- Hoyer, S and Hamman, J 2017 xarray: N-D labeled arrays and datasets in Python. Journal of Open Research Software, 5(1). DOI: 10.5334/jors.148
- Hoyer, S, Fitzgerald, C, Hamman, J, Kleeman, A, Kluyver, T, Roos, M, Helmus, J J, Markel, M, Cable, P, Maussion, F, Miles, A, Kanmae, T, Wolfram, P, Sinclair, S, Bovy, B, Ebrevdo, R, Guedes, R, Abernathey, R, Filipe, S, Hill, N, Richards, A, Lee, N, Koldunov, M, Maciekswat, G, Gerard, J, Babuschkin, I, Deil, C, Welch, E and Hilboll, A 2019 Xarray:.
http://xarray.pydata.org/en/stable/ . - Hunter, J D May 2007 Matplotlib: A 2D graphics environment. Computing In Science & Engineering, 9(3): 90–95. ISSN 1521-9615. DOI: 10.1109/MCSE.2007.55
- Jones, E, Oliphant, T, Peterson, P, et al. 2001 SciPy: Open Source scientific tools for Python. URL
http://www.scipy.org/ . [Online; accessed 13 Dec 2018]. - Jordahl, K 2014 GeoPandas: Python tools for geographic data. URL
https://github.com/geopandas/geopandas . - Knight, S 2010 Scons user guide. Python Software Foundation.
- Lewis, A, Lymburner, L, Purss, M B J, Brooke, B, Evans, B, Ip, A, Dekker, A G, Irons, J R, Minchin, S, Mueller, N, et al. 2016 Rapid, high-resolution detection of environmental change over continental scales from satellite data-the Earth Observation Data Cube. International Journal of Digital Earth, 9(1): 106–111. DOI: 10.1080/17538947.2015.1111952
- Lewis, A, Oliver, S, Lymburner, L, Evans, B, Wyborn, L, Mueller, N, Raevksi, G, Hooke, J, Woodcock, R, Sixsmith, J, Wu, W, Tan, P, Li, F, Killough, B, Minchin, S, Roberts, D, Ayers, D, Bala, B, Dwyer, J, Dekker, A, Dhu, T, Hicks, A, Ip, A, Purss, M, Richards, C, Sagar, S, Trenham, C, Wang, P and Wang, L-W December 2017 The Australian geoscience data cube-Foundations and lessons learned. Remote Sensing of Environment, 202: 276–292. DOI: 10.1016/j.rse.2017.03.015
- McKinney, W 2015 Pandas: A Python data analysis library. URL
http://pandas.pydata.org . - Megies, T, Beyreuther, M, Barsch, R, Krischer, L and Wassermann, J 2011 ObsPy – what can it do for data centers and observatories? Annals of Geophysics, 54(1): 47–58. ISSN 1593-5213. DOI: 10.4401/ag-4838
- Morse, P, Reading, A M and Stål, T 2019 Well-posed geoscientific visualization through interactive and color mapping. Frontiers in Earth Science. DOI: 10.3389/feart.2019.00274
- Oliphant, T E 2006 A guide to NumPy, 1. Trelgol Publishing USA.
- Pedregosa, F, Varoquaux, G, Gramfort, A, Michel, V, Thirion, B, Grisel, O, Blondel, M, Prettenhofer, P, Weiss, R, Dubourg, V, et al. 2011 Scikit-learn: Machine learning in python. Journal of machine learning research, 12(Oct): 2825–2830.
- QGIS. 2015 QGIS geographic information system. Open Source Geospatial Foundation Project. By development team and community.
- Ramachandran, P and Varoquaux, G 2011 Mayavi: 3D visualization of scientific data. Computing in Science and Engineering, 13(2): 40–51. ISSN 1521-9615. DOI: 10.1109/MCSE.2011.35
- Rew, R and Davis, G 1990 NetCDF: An Interface for Scientific Data Access. IEEE Computer Graphics and Applications, 10(4): 76–82. ISSN 0272-1716. DOI: 10.1109/38.56302
- Robitaille, T P, Tollerud, E J, Greenfield, P, Droettboom, M, Bray, E, Aldcroft, T, Davis, M, Ginsburg, A, Price-Whelan, A M, Kerzendorf, W E, et al. 2013 Astropy: A community python package for astronomy. Astronomy & Astrophysics, 558: A33. DOI: 10.1051/0004-6361/201322068
- Rocklin, M 2015 Dask: Parallel computation with blocked algorithms and task scheduling. In Proceedings of the 14th Python in Science Conference, number 130–136.
Citeseer . DOI: 10.25080/Majora-7b98e3ed-013 - Roth, G, Matsuoka, K, Skoglund, A, Melvær, Y and Tronstad, S February 2018 Quantarctica: A unique, open, standalone GIS package for Antarctic research and education. URL
http://quantarctica.npolar.no . - Schöberl, J, Martin, K and Lorensen, B 2006 Kitware, The Visualization Toolkit. Technical report. (VTK).
- Stål, T January 2020 Agrid code and tests v. 0.4.0. Zenodo. DOI: 10.5281/zenodo.2553966
- Stål, T, Reading, A M, Halpin, J A and Whittaker, J M August 2019 A multivariate approach for mapping lithospheric domain boundaries in east Antarctica. Geophysical Research Letters. DOI: 10.1029/2019GL083453
- Stål, T, Reading, A M, Halpin, J and Whittaker, J 2020 The Antarctic crust and upper mantle: A 3D model and framework for interdisciplinary research. Manuscript in preparation.
- Thompson, J F, Soni, B K and Weatherill, N P 1998 Handbook of grid generation. CRC press.
- Uieda, L October 2018 Verde: Processing and gridding spatial data using green’s functions. Journal of Open Source Software, 3(30): 957. DOI: 10.21105/joss.00957
- van der Walt, S, Colbert, S C and Varoquaux, G 2011 The NumPy array: A structure for efficient numerical computation. Computing in Science & Engineering, 13(2): 22–30. DOI: 10.1109/MCSE.2011.37
- Warmerdam, F and GDAL/O. G. R. contributors. software Library, GDAL/OGR Geospatial Data Abstraction. Foundation, Open Source Geospatial, 2018. URL
http://gdal.org . - Wilson, G, Aruliah, D A, Brown, C T, Chue Hong, N P, Davis, M, Guy, R T, Haddock, S H D, Huff, K D, Mitchell, I M, Plumbley, M D and Others 2014 Best practices for scientific computing. PLoS biology, 12(1):
e1001745 . DOI: 10.1371/journal.pbio.1001745 - Zwally, H J, Giovinetto, M B, Beckley, M A and Saba, J L 2012 Antarctic and Greenland drainage systems, gsfc cryospheric sciences laboratory. Available at
icesat4.gsfc.nasa.gov/cryo_data/ant_grn_drainage_systems.php . Accessed March 1, 2015. - Met Office 2019 Cartopy: A cartographic python library with a matplotlib interface. Exeter, Devon. URL
http://scitools.org.uk/cartopy .
DOI: https://doi.org/10.5334/jors.287 | Journal eISSN: 2049-9647
Language: English
Submitted on: Jul 28, 2019
Accepted on: Jan 9, 2020
Published on: Jan 30, 2020
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
Keywords:
© 2020 Tobias Stål, Anya M. Reading, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.