
Open-Source MUltiple Tests Corrections and FOrmatted Tables Software (MUFOS)
By: Nikolay Petrov, Vasil Atanasov and Trevor Thompson
References
- Šidák Z. Rectangular confidence regions for the means of multivariate normal distributions. Journal of the American Statistical Association. 1967; 62(318): 626–633. DOI: 10.1080/01621459.1967.10482935
- Hochberg Y. A sharper Bonferroni procedure for multiple tests of significance. Biometrika. 1988; 75(4): 800–802. DOI: 10.1093/biomet/75.4.800
- Hommel G. A stagewise rejective multiple test procedure based on a modified Bonferroni test. Biometrika. 1988; 75(2): 383–386. DOI: 10.1093/biomet/75.2.383
- Holm S. A simple sequentially rejective multiple test procedure. Scandinavian journal of statistics. 1979; 65–70.
- Benjamini Y, Hochberg Y. Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. Journal of the Royal Statistical Society. Series B (Methodological). 1995; 57(1): 289–300. DOI: 10.1111/j.2517-6161.1995.tb02031.x
- Benjamini Y, Yekutieli D. The control of the false discovery rate in multiple testing under dependency. The Annals of Statistics. 2001; 29(4): 1165–1188. DOI: 10.1214/aos/1013699998
- Benjamini Y, Krieger AM, Yekutieli D. Adaptive linear step-up procedures that control the false discovery rate. Biometrika. 2006; 93(3): 491–507. DOI: 10.1093/biomet/93.3.491
- Benjamini Y, Hochberg Y. On the adaptive control of the false discovery rate in multiple testing with independent statistics. Journal of educational and Behavioral Statistics. 2000; 25(1): 60–83. DOI: 10.3102/10769986025001060
- Bretz F, Hothorn T, Westfall P. Multiple Comparisons Using R. Chapman and Hall/CRC; 2016. DOI: 10.1201/9781420010909
- Farcomeni A. A review of modern multiple hypothesis testing, with particular attention to the false discovery proportion. Statistical Methods in Medical Research. 2008; 17(4): 347–388. DOI: 10.1177/0962280206079046
- Lee S, Lee DK. What is the proper way to apply the multiple comparison test? Korean Journal of Anesthesiology. 2018; 71(5): 353–360. DOI: 10.4097/kja.d.18.00242
- Tamhane AC, Gou J. Advances in p-Value Based Multiple Test Procedures. Journal of Biopharmaceutical Statistics. 2018; 28(1): 10–27. DOI: 10.1080/10543406.2017.1378666
- Wang D, Li Y, Wang X, Liu X, Fu B, Lin Y, Larsen L, Offen W. Overview of multiple testing methodology and recent development in clinical trials. Contemporary Clinical Trials. 2015; 45: 13–20. DOI: 10.1016/j.cct.2015.07.014
- Armstrong RA. When to use the Bonferroni correction. Ophthalmic and Physiological Optics. 2014; 34(5): 502–508. DOI: 10.1111/opo.12131
- Gyorffy B, Gyorffy A, Tulassay Z. The problem of multiple testing and its solutions for genom-wide studies. 2005; 146(12): 559–563.
- Lakens D. The 20% Statistician: Error Control in Exploratory ANOVA’s: The How and the Why; 2016. URL
http://daniellakens.blogspot.com/2016/01/error-control-in-exploratory-anovas-how.html . [Online; accessed 17-July-2020]. - Lakens D. The 20% Statistician: Why you don’t need to adjust your alpha level for all tests you’ll do in your lifetime; 2016. URL
http://daniellakens.blogspot.com/2016/02/why-you-dont-need-to-adjust-you-alpha.html . [Online; accessed 17-July-2020]. - Noble WS. How does multiple testing correction work? Nature biotechnology. 2009; 27(12): 1135–1137. DOI: 10.1038/nbt1209-1135
- Streiner DL. Best (but oft-forgotten) practices: the multiple problems of multiplicity—whether and how to correct for many statistical tests. The American Journal of Clinical Nutrition. 2015; 102(4): 721–728. DOI: 10.3945/ajcn.115.113548
- Bennett CM, Miller, MB, Wolford GL. Neural correlates of interspecies perspective taking in the post-mortem Atlantic Salmon: An argument for multiple comparisons correction. Neuroimage. 2009; 47(Suppl 1): S125. DOI: 10.1016/S1053-8119(09)71202-9
- Austin PC, Mamdani MM, Juurlink DN, Hux JE. Testing multiple statistical hypotheses resulted in spurious associations: a study of astrological signs and health. Journal of clinical epidemiology. 2006; 59(9): 964–969. DOI: 10.1016/j.jclinepi.2006.01.012
- Lesack K, Naugler C. An open-source software program for performing Bonferroni and related corrections for multiple comparisons. Journal of pathology informatics. 2011; 2. DOI: 10.4103/2153-3539.91130
- MATLAB. 9.7.0.1190202 (R2019b). The MathWorks Inc.; 2018.
- R Core Team. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing; 2020. URL
https://www.R-project.org/ . - Van Rossum G, Drake FL. Python 3 Reference Manual. CreateSpace; 2009.
- IBM Corp. IBM SPSS Statistics for Windows; 2017. URL
https://hadoop.apache.org . - Microsoft Corporation. Microsoft Excel; 2018. URL
https://office.microsoft.com/excel . - Baker M. Scientific computing: Code alert. Nature. 2017; 541(7638): 563–565. DOI: 10.1038/nj7638-563a
- JASP Team. JASP (Version 0.13.1)[Computer software]; 2020. URL
https://jasp-stats.org/ . - American Psychological Association. Publication manual of the American Psychological Association. American Psychological Association; 2020. DOI: 10.1037/0000165-000
- McKinney W, others. Data structures for statistical computing in python. In: Proceedings of the 9th Python in Science Conference. Austin, TX;
2010 . DOI: 10.25080/Majora-92bf1922-00a - Oliphant TE. A guide to NumPy. Trelgol Publishing USA; 2006.
- Seabold S, Perktold J. Statsmodels: Econometric and statistical modeling with python. In: 9th Python in Science Conference;
2010 . DOI: 10.25080/Majora-92bf1922-011 - Van Rossum G. The Python Library Reference, release 3.8.2. Python Software Foundation; 2020.
- n.d. Python-docx. URL
https://python-docx.readthedocs.io/en/latest/# . [Online; accessed 13-August-2020]. - Gazoni E, Clark. openpyxl – A Python library to read/write Excel 2010 xlsx/xlsm files, version 3.0.4; 2020. URL
https://openpyxl.readthedocs.io/en/stable/index.html . [Online; accessed 13-August-2020]. - Reitz K. requests: Python HTTP for Humans; 2020. URL
http://python-requests.org/ . - Cortesi D. PyInstaller Manual, Release 4.0; 2020. URL
https://pyinstaller.readthedocs.io/en/stable/ . - NSIS Team. Nullsoft Scriptable Install System (NSIS), version 3.06.1; 2020. URL
http://nsis.sourceforge.net/ .
DOI: https://doi.org/10.5334/jors.350 | Journal eISSN: 2049-9647
Language: English
Submitted on: Sep 29, 2020
Accepted on: Mar 3, 2022
Published on: Mar 17, 2022
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
Keywords:
© 2022 Nikolay Petrov, Vasil Atanasov, Trevor Thompson, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.