Skip to main content
Have a personal or library account? Click to login
Open-Source MUltiple Tests Corrections and FOrmatted Tables Software (MUFOS) Cover

Open-Source MUltiple Tests Corrections and FOrmatted Tables Software (MUFOS)

Open Access
|Mar 2022

References

  1. Šidák Z. Rectangular confidence regions for the means of multivariate normal distributions. Journal of the American Statistical Association. 1967; 62(318): 626633. DOI: 10.1080/01621459.1967.10482935
  2. Hochberg Y. A sharper Bonferroni procedure for multiple tests of significance. Biometrika. 1988; 75(4): 800802. DOI: 10.1093/biomet/75.4.800
  3. Hommel G. A stagewise rejective multiple test procedure based on a modified Bonferroni test. Biometrika. 1988; 75(2): 383386. DOI: 10.1093/biomet/75.2.383
  4. Holm S. A simple sequentially rejective multiple test procedure. Scandinavian journal of statistics. 1979; 6570.
  5. Benjamini Y, Hochberg Y. Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. Journal of the Royal Statistical Society. Series B (Methodological). 1995; 57(1): 289300. DOI: 10.1111/j.2517-6161.1995.tb02031.x
  6. Benjamini Y, Yekutieli D. The control of the false discovery rate in multiple testing under dependency. The Annals of Statistics. 2001; 29(4): 11651188. DOI: 10.1214/aos/1013699998
  7. Benjamini Y, Krieger AM, Yekutieli D. Adaptive linear step-up procedures that control the false discovery rate. Biometrika. 2006; 93(3): 491507. DOI: 10.1093/biomet/93.3.491
  8. Benjamini Y, Hochberg Y. On the adaptive control of the false discovery rate in multiple testing with independent statistics. Journal of educational and Behavioral Statistics. 2000; 25(1): 6083. DOI: 10.3102/10769986025001060
  9. Bretz F, Hothorn T, Westfall P. Multiple Comparisons Using R. Chapman and Hall/CRC; 2016. DOI: 10.1201/9781420010909
  10. Farcomeni A. A review of modern multiple hypothesis testing, with particular attention to the false discovery proportion. Statistical Methods in Medical Research. 2008; 17(4): 347388. DOI: 10.1177/0962280206079046
  11. Lee S, Lee DK. What is the proper way to apply the multiple comparison test? Korean Journal of Anesthesiology. 2018; 71(5): 353360. DOI: 10.4097/kja.d.18.00242
  12. Tamhane AC, Gou J. Advances in p-Value Based Multiple Test Procedures. Journal of Biopharmaceutical Statistics. 2018; 28(1): 1027. DOI: 10.1080/10543406.2017.1378666
  13. Wang D, Li Y, Wang X, Liu X, Fu B, Lin Y, Larsen L, Offen W. Overview of multiple testing methodology and recent development in clinical trials. Contemporary Clinical Trials. 2015; 45: 1320. DOI: 10.1016/j.cct.2015.07.014
  14. Armstrong RA. When to use the Bonferroni correction. Ophthalmic and Physiological Optics. 2014; 34(5): 502508. DOI: 10.1111/opo.12131
  15. Gyorffy B, Gyorffy A, Tulassay Z. The problem of multiple testing and its solutions for genom-wide studies. 2005; 146(12): 559563.
  16. Lakens D. The 20% Statistician: Error Control in Exploratory ANOVA’s: The How and the Why; 2016. URL http://daniellakens.blogspot.com/2016/01/error-control-in-exploratory-anovas-how.html. [Online; accessed 17-July-2020].
  17. Lakens D. The 20% Statistician: Why you don’t need to adjust your alpha level for all tests you’ll do in your lifetime; 2016. URL http://daniellakens.blogspot.com/2016/02/why-you-dont-need-to-adjust-you-alpha.html. [Online; accessed 17-July-2020].
  18. Noble WS. How does multiple testing correction work? Nature biotechnology. 2009; 27(12): 11351137. DOI: 10.1038/nbt1209-1135
  19. Streiner DL. Best (but oft-forgotten) practices: the multiple problems of multiplicity—whether and how to correct for many statistical tests. The American Journal of Clinical Nutrition. 2015; 102(4): 721728. DOI: 10.3945/ajcn.115.113548
  20. Bennett CM, Miller, MB, Wolford GL. Neural correlates of interspecies perspective taking in the post-mortem Atlantic Salmon: An argument for multiple comparisons correction. Neuroimage. 2009; 47(Suppl 1): S125. DOI: 10.1016/S1053-8119(09)71202-9
  21. Austin PC, Mamdani MM, Juurlink DN, Hux JE. Testing multiple statistical hypotheses resulted in spurious associations: a study of astrological signs and health. Journal of clinical epidemiology. 2006; 59(9): 964969. DOI: 10.1016/j.jclinepi.2006.01.012
  22. Lesack K, Naugler C. An open-source software program for performing Bonferroni and related corrections for multiple comparisons. Journal of pathology informatics. 2011; 2. DOI: 10.4103/2153-3539.91130
  23. MATLAB. 9.7.0.1190202 (R2019b). The MathWorks Inc.; 2018.
  24. R Core Team. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing; 2020. URL https://www.R-project.org/.
  25. Van Rossum G, Drake FL. Python 3 Reference Manual. CreateSpace; 2009.
  26. IBM Corp. IBM SPSS Statistics for Windows; 2017. URL https://hadoop.apache.org.
  27. Microsoft Corporation. Microsoft Excel; 2018. URL https://office.microsoft.com/excel.
  28. Baker M. Scientific computing: Code alert. Nature. 2017; 541(7638): 563565. DOI: 10.1038/nj7638-563a
  29. JASP Team. JASP (Version 0.13.1)[Computer software]; 2020. URL https://jasp-stats.org/.
  30. American Psychological Association. Publication manual of the American Psychological Association. American Psychological Association; 2020. DOI: 10.1037/0000165-000
  31. McKinney W, others. Data structures for statistical computing in python. In: Proceedings of the 9th Python in Science Conference. Austin, TX; 2010. DOI: 10.25080/Majora-92bf1922-00a
  32. Oliphant TE. A guide to NumPy. Trelgol Publishing USA; 2006.
  33. Seabold S, Perktold J. Statsmodels: Econometric and statistical modeling with python. In: 9th Python in Science Conference; 2010. DOI: 10.25080/Majora-92bf1922-011
  34. Van Rossum G. The Python Library Reference, release 3.8.2. Python Software Foundation; 2020.
  35. n.d. Python-docx. URL https://python-docx.readthedocs.io/en/latest/#. [Online; accessed 13-August-2020].
  36. Gazoni E, Clark. openpyxl – A Python library to read/write Excel 2010 xlsx/xlsm files, version 3.0.4; 2020. URL https://openpyxl.readthedocs.io/en/stable/index.html. [Online; accessed 13-August-2020].
  37. Reitz K. requests: Python HTTP for Humans; 2020. URL http://python-requests.org/.
  38. Cortesi D. PyInstaller Manual, Release 4.0; 2020. URL https://pyinstaller.readthedocs.io/en/stable/.
  39. NSIS Team. Nullsoft Scriptable Install System (NSIS), version 3.06.1; 2020. URL http://nsis.sourceforge.net/.
DOI: https://doi.org/10.5334/jors.350 | Journal eISSN: 2049-9647
Language: English
Submitted on: Sep 29, 2020
Accepted on: Mar 3, 2022
Published on: Mar 17, 2022
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2022 Nikolay Petrov, Vasil Atanasov, Trevor Thompson, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.