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Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units Cover

Ecoindicators: An R Package for the Identification of Indicator Taxonomic Units

Open Access
|Oct 2023

Figures & Tables

Table 1

Functions included.

FUNCTION TYPENAMEDESCRIPTION
DatasoilandfaunaSoil physico-chemical properties and soil fauna of three sites in the Pampean plain
Basic useselect_indicator_speciesSelection of species or taxonomic units that indicate with a given probability of belonging to an environment
Basic useidentify_envIdentify the environment from new samples of community species
Auxiliaryidentify_env_testTests the accuracy of the environment identification of a set of samples
Auxiliaryas_niche_factorConverts a vector or matrix of quantitative environmental data into a factorized version with a desired number of partitions.
Basic usesp_hypercubeReturns the frequency of any taxonomic unit in a selected combination of environmental factors
Figure 1

Main functions and flowchart for basic usage.

Figure 2

3D scatter plot of the presence of the Onychiuridae taxon regarding the environmental variables N, P, and OM.

Figure 3

3D scatter plot of the simultaneous occurrence of taxonomic units Onychiuridae, Isotomidae, Eupodoidea, and Aporrectodea rosea.

DOI: https://doi.org/10.5334/jors.452 | Journal eISSN: 2049-9647
Language: English
Submitted on: Dec 30, 2022
Accepted on: Aug 29, 2023
Published on: Oct 13, 2023
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2023 Andrés Esteban Duhour, Hernán de la Vega, Liliana Falco, Carlos Coviella, Nicolás Velazco, Rosana Sandler, Macarena Rionda, Mónica Díaz Porres, Leonardo Saravia, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.