ScatterJn: An ImageJ Plugin for Scatterplot-Matrix Analysis and Classification of Spatially Resolved Analytical Microscopy Data
By: Fabian Zeitvogel and Martin Obst
References
- Zeitvogel F Schmid G Hao L Ingino P Obst M ScatterJ: An ImageJ Plugin for the Evaluation of Analytical Microscopy Datasets Journal of Microscopy 2014 0 1 9 10.1111/jmi.12187
- Manders E M M Verbeek F J Aten J A Measurement of Co-Localization of Objects in Dual-Colour Confocal Images Journal of Microscopy 1993 169 3 375 382 10.1111/j.1365-2818.1993.tb03313.x
- Bolte S Cordelières F P A Guided Tour into Subcellular Colocalization Analysis in Light Microscopy Journal of Microscopy 2006 224 3 213 232 10.1111/j.1365-2818.2006.01706.x
- Cutrona J Bonnet N Herbin M Hofer F Advances in the Segmentation of Multi-Component Microanalytical Images Ultramicroscopy 2005 103 2 141 152 10.1016/j.ultramic.2004.11.005
- Lerotic M Jacobsen C Schafer T Vogt S Cluster Analysis of Soft X-Ray Spectromicroscopy Data Ultramicroscopy 2004 100 1–2 35 57 10.1016/j.ultramic.2004.01.008
- Ward J Marvin R O’Halloran T Jacobsen C Vogt S Rapid and Accurate Analysis of an X-Ray Fluorescence Microscopy Data Set through Gaussian Mixture-Mased Soft Clustering Methods Microscopy and Microanalysis 2013 19 5 1281 1289 10.1017/S1431927613012737
- Bright D S Newbury D E Concentration Histogram Imaging – A Scatter Diagram Technique for Viewing 2 or 3 Related Images Analytical Chemistry 1991 63 4 A243 A250 10.1021/ac00004a731
- French A P Mills S Swarup R Bennett M J Pridmore T P Colocalization of Fluorescent Markers in Confocal Microscope Images of Plant Cells Nature Protocols 2008 3 4 619 628 10.1038/nprot.2008.31
- Obst M Wang J Hitchcock A P Soft X-Ray Spectro-Tomography Study of Cyanobacterial Biomineral Nucleation Geobiology 2009 7 5 577 591 10.1111/j.1472-4669.2009.00221.x
-
Martin
A R
Ward
M O
High Dimensional Brushing for Interactive Exploration of Multivariate Data
Proceedings of the 6th Conference on Visualization’95
1995
IEEE Computer Society 10.1109/VISUAL.1995.485139 - Keim D Information Visualization and Visual Data Mining Visualization and Computer Graphics, IEEE Transactions on 2002 8 1 1 8 10.1109/2945.981847
-
Melançon
G
Jourdan
F
Paris
A
Koenig
P-Y
Multiscale Scatterplot Matrix for Visual and Interactive Exploration of Metabonomics Data Visual Information Expert Workshop 2006 Springer 10.1007/978-3-540-71027-1_18 - Schindelin J Arganda-Carreras I Frise E Kaynig V Longair M Pietzsch T Preibisch S Rueden C Saalfeld S Schmid B Tinevez J-Y White D J Hartenstein V Eliceiri K Tomancak P Cardona A Fiji: An Open-Source Platform for Biological-Image Analysis Nature Methods 2012 9 7 676 682 10.1038/nmeth.2019
- Li Q Lau A Morris T J Guo L Fordyce C B Stanley E F A Syntaxin 1, Gαo, and N-type Calcium Channel Complex at a Presynaptic Nerve Terminal: Analysis by Quantitative Immunocolocalization The Journal of Neuroscience 2004 24 16 4070 4081 10.1523/JNEUROSCI.0346-04.2004
- Costes S V Daelemans D Cho E H Dobbin Z Pavlakis G Lockett S Automatic and Quantitative Measurement of Protein-Protein Colocalization in Live Cells Biophysical Journal 2004 86 6 3993 4003 10.1529/biophysj.103.038422
- Abràmoff M D Magalhães P J Ram S J Image Processing with ImageJ Biophotonics International 2004 11 36 41
- Muehe E M Adaktylou I J Obst M Zeitvogel F Behrens S Planer-Friedrich B Kraemer U Kappler A Reducing Conditions and Organic Carbon Input Cause Cadmium Immobilization in a pH-Neutral Soil Environmental Science & Technology 2013 47 13430 13439 10.1021/es403438n
DOI: https://doi.org/10.5334/jors.89 | Journal eISSN: 2049-9647
Language: English
Published on: Feb 3, 2016
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
Keywords:
© 2016 Fabian Zeitvogel, Martin Obst, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.