
CHLOE: A Software Tool for Automatic Novelty Detection in Microscopy Image Datasets
By: Saundra Manning and Lior Shamir
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DOI: https://doi.org/10.5334/jors.bg | Journal eISSN: 2049-9647
Language: English
Published on: Sep 22, 2014
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
Keywords:
© 2014 Saundra Manning, Lior Shamir, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.