
Manual Whisker Annotator (MWA): A Modular Open-Source Tool
By: Brett M. Hewitt, Moi Hoon Yap and Robyn A. Grant
References
- Carvell G E Simons D J Biometric analyses of vibrissal tactile discrimination in the rat The Journal of Neuroscience 1990 10 8 2638 2648
-
Vincent
S B
The functions of the vibrassae in the behavior of the white rat 1912 University of Chicago 1 5 - Gao P Bermejom R Zeigler H P Whisker deafferentation and rodent whisking patterns: behavioral evidence for a central pattern generator The Journal of Neuroscience 2001 21 14 5374 5380
- Grant R A Sperber A L Prescott T J The role of orienting in vibrissal touch sensing Frontiers in behavioral neuroscience 2012 6 10.3389/fnbeh.2012.00039
- Brecht M Preilowski B Merzenich M M Functional architecture of the mystacial vibrassae Behavioural Brain Research 1997 84 1 81 97 10.1016/S0166-4328(97)83328-1
- Woolsey T A Van der Loos H The structural organization of layer IV in the somatosensory region (SI) of mouse cerebral cortex: the description of a cortical field composed of discrete cytoarchitectonic units Brain research 1970 17 2 205 242 10.1016/0006-8993(70)90079-X
- Grant R A Sharp A J Kennerley P S Berwick J Grierson A Ramesh T Prescott T J Abnormalities in whisking behaviour are associated with lesions in brain stem nuclei in a mouse model of amyotrophic lateral sclerosis Behavioural Brain Research 2014 259 374 283 10.1016/j.bbr.2013.11.002
- Perkon I Košir A Itskov P M Tasič J Diamond M E Unsupervised quantification of whisking and head movement in freely moving rodents Journal of Neurophysiology 2011 105 4 1950 1962 10.1152/jn.00764.2010
- Knutsen P M Derdikman D Ahissar E Tracking whisker and head movements in unrestrained behaving rodents Journal of neurophysiology 2005 93 4 2294 2301 10.1152/jn.00718.2004
- Clack N G O’Connor D H Huber D Petreanu L Hires A Peron S Myers E W Automated tracking of whiskers in videos of head fixed rodents PLoS Comput Biol 2012 8 7 e1002591 10.1371/journal.pcbi.1002591
- Grant R A Mitchinson B Fox C W Prescott T J Active touch sensing in the rat: anticipatory and regulatory control of whisker movements during surface exploration Journal of neurophysiology 2009 101 2 862 874 10.1152/jn.90783.2008
- Hartmann M J Johnson N J Towal R B Assad C Mechanical characteristics of rat vibrissae: resonant frequencies and damping in isolated whiskers and in the awake behaving animal The Journal of neuroscience 2003 23 16 6510 6519
- Mitchinson B Martin C J Grant R A Prescott T J Feedback control in active sensing: rat exploratory whisking is modulated by environmental contact Proceedings of the Royal Society of London B: Biological Sciences 2007 274 1613 1035 1041 10.1098/rspb.2006.0347
-
Brown
D
Tracker Video Analysis and Modelling Tool (Version 4.90)
2009
URL:
http://www.cabrillo.edu/~dbrown/tracker - Sherwood T Admad E Yap M H Formulating Efficient Software Solution for Digital Image Processing System Journal of Software: Practice and Experience 2015 10.1002/spe.2339
- Bradski G Kaehler A Learning OpenCV: Computer vision with the OpenCV library 2008 O’Reilly Media, Inc
-
Operating System Market Share
Retrieved 31/03/2016 from
https://www.netmarketshare.com/operating-system-market-share.aspx?qprid=10&qpcustomd=0 - Mamone M Introducing Development Tools and MonoDevelop Practical Mono 2006 21 40 10.1007/978-1-4302-0097-0_2
- Berg R W Kleinfeld D Rhythmic whisking by rat: retraction as well as protraction of the vibrassae is under active muscular control Journal of neurophysiology 2003 89 1 104 117 10.1152/jn.00600.2002
- Kleinfeld D Vibrassa Movement, Sensation and Sensorimotor Control 2008 San Diego University of California
- Sofroniew N J Cohen J D Lee A K Svoboda K Natural whisker-guided behavior by head-fixed mice in tactile virtual reality The Journal of Neuroscience 2014 34 29 9537 9550 10.1523/JNEUROSCI.0712-14.2014
- Ahissar E Knutsen P M Object localization with Whiskers Biological cybernetics 2008 98 6 449 458 10.1007/s00422-008-0214-4
- Pammer L O’Connor D H Hires S A Clack N G Huber D Myers E W Svoboda K The mechanical variables underlying object localization along the axis of the whisker The Jounral of Neuroscience 2013 33 16 6726 6741 10.1523/JNEUROSCI.4316-12.2013
- Pearson M J Pipe A G Melhuish C Mitchinson B Prescott T J Whiskerbot: a robotic active touch system modeled on the rat whisker sensory system Adaptive Behavior 2007 15 3 223 240 10.1177/1059712307082089
- Bale M R Campagner D Erskine A Petersen R S Microsecond-scale timing precision in rodent trigeminal primary afferents The Journal of Neuroscience 2015 35 15 5935 5940 10.1523/JNEUROSCI.3876-14.2015
- Campagner D Evans M H Bale M R Erskine A Petersen R S Prediction of primary somatosensory neuron activity during active tactile exploration bioRxiv 2015 024364 10.7554/eLife.10696
- Farin G Algorithms for rational Bézier curves Computer-aided design 1983 15 2 73 77 10.1016/0010-4485(83)90171-9
- Szwed M Bagdasarian K Ahissar E Encoding of vibrissal active touch Neuron 2003 40 3 621 630 10.1016/S0896-6273(03)00671-8
- Clack N G O’Connor D H Huber D Petreanu L Hires A Peron S Myers E W Automated tracking of whiskers in videos of head fixed rodents PLoS Computational Biology 2012 8 7 e1002591 10.1371/journal.pcbi.1002591
- Berg R W Kleinfeld D Rhythmic whisking by rat: retraction as well as protraction of the vibrissae is under active muscular control Journal of neurophysiology 2003 89 1 104 117 10.1152/jn.00600.2002
- Grant R A Mitchinson B Prescott T J The development of whisker control in rats in relation to locomotion Developmental Psychobiology 2012 54 151 168 10.1002/dev.20591
- Harris F J On the use of windows for harmonic analysis with the discrete Fourier transform Proceedings of the IEEE 1978 66 1 51 83 10.1109/PROC.1978.10837
- Towal R B Hartmann M J Right–left asymmetries in the whisking behavior of rats anticipate head movements The Journal of neuroscience 2006 26 34 8838 8846 10.1523/JNEUROSCI.0581-06.2006
- Arkley K Grant R A Mitchinson B Prescott T J Strategy change in vibrissal active sensing during rat locomotion Current Biology 2014 24 13 1507 1512 10.1016/j.cub.2014.05.036
- Grant R A Mitchinson B Prescott T J The development of whisker control in rats in relation to locomotion Developmental psychobiology 2012 54 2 151 168 10.1002/dev.20591
DOI: https://doi.org/10.5334/jors.93 | Journal eISSN: 2049-9647
Language: English
Published on: Apr 28, 2016
Published by: Ubiquity Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
Keywords:
© 2016 Brett M. Hewitt, Moi Hoon Yap, Robyn A. Grant, published by Ubiquity Press
This work is licensed under the Creative Commons Attribution 4.0 License.